PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang02g12310.2
Common NameLR48_Vigan10g210300
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family MYB_related
Protein Properties Length: 241aa    MW: 27396.7 Da    PI: 5.3907
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang02g12310.2genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding42.71.3e-131474146
                     TSSS-HHHHHHHHHHHHHTTTT................-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg................tWktIartmgkgRtlkqcksrwqk 46
                     rg+WT eEd +l + +   G +                 W++Ia++++ gRt++++k++w++
   Vang02g12310.2 14 RGPWTIEEDHKLMNFILNNGIHcwravpklagisfvknLWSKIASHFP-GRTDNEIKNHWNT 74
                     89**********************************************.***********96 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466893.15E-13384IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.604.2E-19581IPR009057Homeodomain-like
PROSITE profilePS5129415.721980IPR017930Myb domain
SMARTSM007178.7E-81378IPR001005SANT/Myb domain
CDDcd001673.06E-61674No hitNo description
PfamPF002494.0E-75374IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 241 aa     Download sequence    Send to blast
MGRQPCCDKV GLKRGPWTIE EDHKLMNFIL NNGIHCWRAV PKLAGISFVK NLWSKIASHF  60
PGRTDNEIKN HWNTKIKKRL KVLGLDPLTL MPIEQKQQQS GDDDKLKTEK QQKSTSKGSD  120
QGVDSKPLDM HATGEEPKTE DKMEEKKVTW DDTTGFLNNY EMLCSQLELG SWLSQETKAS  180
TSSYCSSSFS LDDSSNLSVC ESSYLQENSL QQWVEDLDSS LSWDSFNPLH TDFPFLENRQ  240
*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150440.0AP015044.1 Vigna angularis var. angularis DNA, chromosome 11, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007151568.11e-122hypothetical protein PHAVU_004G057800g
TrEMBLA0A0L9VMB61e-152A0A0L9VMB6_PHAAN; Uncharacterized protein
TrEMBLA0A0S3T8K81e-152A0A0S3T8K8_PHAAN; Uncharacterized protein
STRINGGLYMA19G07830.11e-114(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G14340.18e-47myb domain protein 40
Publications ? help Back to Top
  1. Yang K, et al.
    Genome sequencing of adzuki bean (Vigna angularis) provides insight into high starch and low fat accumulation and domestication.
    Proc. Natl. Acad. Sci. U.S.A., 2015. 112(43): p. 13213-8
    [PMID:26460024]